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PLoS One. 2011;6(12):e28798. Epub 2011 Dec 8.
Source: http://www.ncbi.nlm.nih.gov/pubmed/22174901
Genome-wide association study of hepatocellular carcinoma in southern
chinese patients with chronic hepatitis B virus infection.
Chan KY, Wong CM, Kwan JS, Lee JM, Cheung KW, Yuen MF, Lai CL, Poon RT,
Sham PC, Ng IO. SourceState Key Laboratory for Liver Research, The
University of Hong Kong, Hong Kong.
Abstract One of the most relevant risk
factors for hepatocellular carcinoma (HCC) development is chronic hepatitis
B virus (HBV) infection, but only a fraction of chronic HBV carriers
develop HCC, indicating that complex interactions among viral,
environmental and genetic factors lead to HCC in HBV-infected patients. So
far, host genetic factors have incompletely been characterized. Therefore,
we performed a genome-wide association (GWA) study in a Southern Chinese
cohort consisting of 95 HBV-infected HCC patients (cases) and 97
HBV-infected patients without HCC (controls) using the Illumina
Human610-Quad BeadChips. The top single nucleotide polymorphisms (SNPs)
were then validated in an independent cohort of 500 cases and 728 controls.
4 SNPs (rs12682266, rs7821974, rs2275959, rs1573266) at chromosome 8p12
showed consistent association in both the GWA and replication phases
(OR(combined)?=?1.31-1.39; p(combined)?=?2.71×10(-5)-5.19×10(-4);
PAR(combined)?=?26-31%). We found a 2.3-kb expressed sequence tag (EST) in
the region using in-silico data mining and verified the existence of the
full-length EST experimentally. The expression level of the EST was
significantly reduced in human HCC tumors in comparison to the
corresponding non-tumorous liver tissues (P<0.001). Results from sequence
analysis and in-vitro protein translation study suggest that the transcript
might function as a long non-coding RNA. In summary, our study suggests
that variations at chromosome 8p12 may promote HCC in patients with HBV.
Further functional studies of this region may help understand
HBV-associated hepatocarcinogenesis. |
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