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- National Reference Center for Viral Hepatitis B, C and D, Department of Virology, Hôpital Henri Mondor, Université Paris-Est, Créteil, France
- INSERM U955, Créteil, France
- Reprint requests Address requests for reprints to: Professor Jean-Michel Pawlotsky, MD, PhD, Department of Virology, Hôpital Henri Mondor, 51 Avenue du Maréchal de Lattre de Tassigny, 94010 Créteil, France. fax: (33) 1-4981-4831
The onset of the acquired immune deficiency syndrome epidemic in the early 1980s led to successful antiviral drug discovery programs, which brought to the market a large number of antiretroviral drugs with different targets and mechanisms of action. However, it soon became apparent that human immunodeficiency virus (HIV) resistance to these drugs would be a problem in long-term antiretroviral therapy.1 A combination of drugs with different viral targets and no cross-resistance (highly active antiretroviral therapy [HAART]) was shown to be a valuable option to prevent HIV resistance in the long-term. Nevertheless, multidrug-resistant viruses emerge in some patients on HAART therapy, generally those who have been on treatment for many years and have received a number of different drugs during their life. These viruses escape the antiviral effect of all available drugs and their outgrowth is responsible for treatment failure, disease progression, and death.1Based on this experience, hepatitis B virus (HBV) and hepatitis C virus (HCV) resistance to direct-acting antiviral (DAA) drugs often is seen as a dreadful threat. The reality is, however, different.
Hepatitis B Virus Resistance to Nucleoside/Nucleotide Analogues Lamivudine, a drug widely used in HAART therapy, was the first nucleoside analogue available for HBV treatment. Its broad use in monotherapy was associated with a high incidence of virologic breakthrough owing to the selection and outgrowth of lamivudine-resistant HBV variants.2 Similar observations were reported after a few years of monotherapy with adefovir, a nucleotide analogue developed for HIV and the second inhibitor approved for HBV therapy.3 Because these 2 drugs select different resistance-associated amino acid substitutions, they were combined to prevent resistance emergence. This strategy proved to be efficient, with very few breakthroughs on de novo or add-on lamivudine–adefovir combination therapy,4, 5 and it still is appropriate in resource-constrained settings. However, viruses bearing an rtA181V/T substitution, which confers cross-resistance to the 2 drugs, occasionally were selected in patients receiving the combination of lamivudine and adefovir.6
Bearing this in mind, some investigators, including myself, were convinced that, similar for HIV, de novo combinations of drugs without cross-resistance were the only valid therapeutic option for chronic hepatitis B treatment with nucleoside/nucleotide analogues, and that even this option probably would not prevent outgrowth of multidrug-resistant viruses after several years of combined therapy. In the meantime, 2 new drugs, entecavir and tenofovir, had been approved for HBV therapy. Surprisingly, long-term follow-up studies of HBV resistance with these drugs showed incredibly low cumulative resistance rates in treatment-naive patients: 1.2% with entecavir at 6 years and 0% with tenofovir at 5 years.7, 8 These results subsequently were confirmed in the real-life setting, in which treatment failures caused by resistance were extremely rare in adherent treatment-naive patients receiving entecavir or tenofovir monotherapy. This led to the conclusion that, unlike HIV, HBV infection can be treated for years with either first-line entecavir or tenofovir monotherapy without a major risk of viral breakthrough owing to resistance selection.9, 10
This favorable situation can be explained by the characteristics of HBV and of the drugs used to block its replication. Indeed, strong conservatory constraints exist on the amino acid sequence of HBV proteins because of the overlapping reading frames that encode different viral proteins that cannot tolerate extensive variations. As a result, the number of possible viable viruses with amino acid substitutions in the reverse transcriptase that confer primary resistance to HBV nucleoside/nucleotide analogues is limited. In addition, although rtM204V/I confers reduced susceptibility to entecavir and rtN236T and rtA181V/T confer reduced susceptibility to tenofovir in vitro,11 the drug concentrations achieved in vivo are high enough to control the replication of HBV variants bearing these substitutions in the long term in treatment-naive patients, preventing the accumulation of additional substitutions that could improve their fitness. Finally, triple mutants that are fully resistant to entecavir do not appear to pre-exist frequently at baseline in patients who have not been exposed previously to lamivudine. Therefore, their selection by first-line entecavir is unlikely, and the antiviral potency of the drug prevents them from being generated on treatment.7
In treated patients, adherence to therapy is a key factor of maintained antiviral efficacy without virologic breakthroughs. Whether viral resistance could emerge after many years in patients likely to receive life-long treatment with these drugs remains unknown. Long-term follow-up studies therefore are needed. For this reason, some experts recommend de novo combination of tenofovir and one of the nucleoside analogues, or tenofovir and emtricitabine in one tablet, in patients with advanced HBV-related liver disease, because resistance emergence would be life-threatening in these individuals.
In patients already exposed to a nucleoside/nucleotide analogue who developed HBV resistance to this drug, the “add-on” strategy was shown to be superior to the “switch” strategy in preventing selection of viral variants that are resistant to lamivudine and adefovir.4 However, the superiority of the add-on vs switch strategy has not been shown with entecavir or tenofovir, which are more potent and have a higher barrier to resistance. Given the number of patients and length of follow-up evaluation needed to answer this question, it is likely that this information will never be available. In this context, it is reasonable to recommend that patients who developed resistance to one of the available HBV drugs be treated with a combination of tenofovir plus 1 of the 3 nucleoside analogues (lamivudine, telbivudine, or entecavir), or with the combination of tenofovir plus emtricitabine in one tablet, because this strategy is the only one that can delay the emergence of multidrug resistance. In this respect, the best combination by far is tenofovir plus entecavir, but long-term tolerance data are lacking and cost may be an issue in certain areas of the world. This approach is particularly important in the absence of any alternative therapy active on viruses that would escape both nucleoside and nucleotide analogues, especially in patients with advanced liver disease.
HCV Resistance to DAA Drugs The virologic characteristics of HCV suggested that HCV resistance would be an issue when DAA drugs become available. Indeed, HCV is a highly variable positive-strand RNA virus, with large populations and a very short half-life of free virions in peripheral blood.12, 13 Mathematic modeling predicted that, in every infected patient, all possible single, double, and possibly triple mutants are generated each day and can be selected by DAA administration.14 The pre-existence of viral variants bearing amino acid substitutions that confer resistance to the different classes of drugs in treatment-naive patients has been shown by means of ultra-sensitive, pyrosequencing-based methods.15 In vitro, all DAAs currently in development select resistant, generally fit variants after multiple passages.16 Monotherapy studies with DAAs with a low barrier to resistance, including NS3/4A protease inhibitors and non-nucleoside inhibitors of HCV RNA–dependent RNA polymerase and NS5A inhibitors, have shown early virologic breakthroughs owing to the selection and outgrowth of fit-resistant viral populations. Other classes of drugs appear to have better resistance profiles, such as, for instance, the nucleoside/nucleotide analogue inhibitors of HCV RNA-dependent RNA polymerase, which select resistant variants that are poorly fit and grow slowly in the presence of the drug, or the cyclophylin inhibitors, which target a host protein involved in HCV replication, not a viral structure.16
To prevent resistance emergence, a DAA must be combined with one or several other, non–cross-resistant antiviral molecules. Three options currently are being explored: triple combinations with a DAA, pegylated interferon (IFN)-alfa, and ribavirin; quadruple combinations with 2 non–cross-resistant DAAs, pegylated IFN-alfa, and ribavirin; and all-oral, IFN-free drug regimens. Clinical trials with these strategies have been reassuring thus far. Indeed, in contrast to HIV and HBV, HCV infection is curable, and cure is easily achievable provided that virus production is profoundly inhibited in a sustained manner, to ensure progressive cure of infected cells, most likely through the action of intracellular responses linked to innate immunity, which are no longer suppressed by viral protein expression. Therefore, the use of combinations of drugs that prevent the emergence of drug-resistant HCV variants over weeks to months is probably sufficient to eradicate all viruses from a patient's liver. The choice of the drugs administered and of treatment duration are thus of the utmost importance.
What was learned from phase II and III triple combination trials is that, not surprisingly, cure of HCV infection is achieved easily in patients who respond to pegylated IFN-alfa and ribavirin; in contrast, treatment failures are seen in poor IFN responders.17, 18, 19 In all patients who fail on this therapy, the population of viral variants resistant to the protease inhibitor grows relative to the wild-type virus that efficiently is inhibited. Indeed, in phase II and III trials, resistant viruses were the dominant population at the time of failure (virologic breakthrough or relapse) in approximately 50%–70% of cases, as detected by population sequencing. When treatment is stopped, the wild-type, protease inhibitor–sensitive viral population was shown to grow back and become dominant again in all patients within a few months, for up to 2 years, as assessed by population sequencing.20 It is possible that protease inhibitor–resistant variants have acquired additional substitutions that further improve their fitness in the presence of a protease inhibitor. Nevertheless, 2 years after a triple combination treatment failure, a situation close to the pretherapeutic one has been restored, with a dominant wild-type viral population and the presence of minor variants bearing amino acid substitutions conferring resistance to protease inhibitors. Selection of resistant HCV variants in these patients does not appear to be harmful, and a new treatment with a first-generation protease inhibitor sharing cross-resistance with telaprevir and boceprevir is not contraindicated, provided that this drug is combined with another drug or several drugs that potently inhibit HCV replication while sharing no cross-resistance with protease inhibitors (thus, excluding re-treatment in combination with pegylated IFN-alfa and ribavirin only).
A recent study, based on a small number of null responders to a first course of pegylated IFN-alfa and ribavirin, has shown viral eradication in all cases with a quadruple combination of pegylated IFN-alfa, ribavirin, and 2 DAAs with no cross-resistance, including an NS3/4A protease inhibitor and an NS5A inhibitor.21 Because the frequency of viral breakthroughs caused by multidrug-resistant viruses was high with these 2 DAAs in the absence of pegylated IFN-alfa and ribavirin for subtype 1a, this result indirectly suggests that sustaining HCV inhibition and preventing early re-increase of viral replication may have restored IFN responsiveness in these patients.
Based on these data, there is no reason to think that an IFN-free regimen would not be able to eradicate HCV in virtually all cases if no resistant HCV variants are selected during treatment. Such a DAA combination must have a high barrier to resistance, and treatment must be administered for long enough to ensure that every infected cell is cured. In a recent proof-of-concept study, 9 of 10 prior null responders to pegylated IFN-alfa and ribavirin infected with HCV subtype 1b achieved viral eradication after 24 weeks of treatment with an NS3/4A protease inhibitor and an NS5A inhibitor, a DAA combination with a high barrier to resistance in this subtype. No patient broke through owing to selection of resistant HCV variants.22 In another study, 10 of 10 treatment-naive patients infected with HCV genotype 2 or 3 achieved an SVR after 12 weeks of a combination of a nucleotide analogue and ribavirin.23
The challenge now will be to identify the optimal IFN-free, all-oral DAA combination that can become the universal first-line therapy for chronic hepatitis C. This combination ideally must have pan-genotype coverage and a high enough barrier to resistance to yield very high cure rates within a reasonable time frame. Given the properties of the drugs currently in development, such a combination could be available within the next 5–7 years. In the meantime, treating physicians should be cautious when using nonoptimal IFN-free combinations because some of them will yield frequent selection of multidrug-resistant viruses. However, these viruses are unlikely to be more aggressive to the patient's liver than wild-type viruses and probably will be replaced by the latter within a few months after treatment failure and discontinuation. Given the current routes of transmission of HCV, such resistant viruses also are unlikely to spread in newly infected individuals.
Conclusions A good story never happens twice, and those who thought that the HIV resistance adventure would start again with hepatitis viruses may be disappointed. Most, if not all, situations in HBV-infected patients now can be controlled with entecavir and/or tenofovir. In resource-constrained areas, tenofovir generally is accessible through HIV programs at a reasonable cost and thus can be used as first-line therapy or in combination with lamivudine in treatment-exposed patients. If tenofovir is not available, the combination of lamivudine and adefovir (often available as a generic drug in these countries) was shown to be efficient in the long term, with a modest risk of selection of resistance owing to rtA181V/T substitutions. Thus, HBV resistance no longer appears as a major threat, at least in the short term to midterm, provided that patients are adherent to therapy. On the other hand, the failure of DAA-containing therapies to cure HCV infection is associated with selection of DAA-resistant viral populations. However, outgrowth of resistant variants is not harmful, and the wild-type virus generally grows back as the dominant species within a few months after therapy. HCV remains curable in these patients, who will have access to better combinations in the midterm future. A pan-genotype, highly efficient, all-oral, IFN-free treatment regimen most likely will be available within a few years. As a result, the rising tide of HIV resistance specialists moving to the hepatitis field might end up as an ebb tide.
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