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Nat Microbiol. 2017 Jun 19;2:17098. doi: 10.1038/nmicrobiol.2017.98.
HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly.
Patel N1, White SJ1, Thompson RF1, Bingham R2, Weiß EU2, Maskell DP1, Zlotnick A3, Dykeman EC2, Tuma R1, Twarock R2, Ranson NA1, Stockley PG1.
Author information
1
Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK.
2
Departments of Biology and Mathematics &York Centre for Complex Systems Analysis, University of York, York YO10 5DD, UK.
3
Department of Molecular &Cellular Biochemistry, Indiana University, Bloomington, Indiana 47405, USA.
Abstract
Formation of the hepatitis B virus nucleocapsid is an essential step in the viral lifecycle, but its assembly is not fully understood. We report the discovery of sequence-specific interactions between the viral pre-genome and the hepatitis B core protein that play roles in defining the nucleocapsid assembly pathway. Using RNA SELEX and bioinformatics, we identified multiple regions in the pre-genomic RNA with high affinity for core protein dimers. These RNAs form stem-loops with a conserved loop motif that trigger sequence-specific assembly of virus-like particles (VLPs) at much higher fidelity and yield than in the absence of RNA. The RNA oligos do not interact with preformed RNA-free VLPs, so their effects must occur during particle assembly. Asymmetric cryo-electron microscopy reconstruction of the T = 4 VLPs assembled in the presence of one of the RNAs reveals a unique internal feature connected to the main core protein shell via lobes of density. Biophysical assays suggest that this is a complex involving several RNA oligos interacting with the C-terminal arginine-rich domains of core protein. These core protein-RNA contacts may play one or more roles in regulating the organization of the pre-genome during nucleocapsid assembly, facilitating subsequent reverse transcription and acting as a nucleation complex for nucleocapsid assembly.
PMID:
28628133
DOI:
10.1038/nmicrobiol.2017.98
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